Agriculture and wetlands File:Clear Lake Drainage Basin.jpg|thumb|Clear Lake watershed (Interactive map) The Clear Lake Watershed contains both
freshwater marshes and
vernal pools. The freshwater marshes are characterized by emergent vegetation including
tules and
cattails among other species. Ecologists have identified over 1,500 vernal pools in the area, largely located on private lands. The largest remaining
wetlands include
Anderson Marsh State Park and Rodman Slough. Wetlands in the Clear Lake watershed serve a variety of important ecological functions, including providing habitat for local fish and wildlife, as well as filtering
sedimentation entering the lake from streams. Due to increased agricultural and urban land use, Clear Lake's historic wetland habitats have been reduced by 79%. Agriculture has been a significant form of land use in the region since the mid-19th century. Analysis of sediment cores drawn from the lake indicate that the increase in sedimentation rates corresponds with an increase in the use of heavy agricultural equipment in the 1930s. Other agricultural activities such as
stream channelization, groundwater pumping, application of fertilizers and pesticide use have contributed to lake sedimentation, hillside erosion and floodplain encroachment. The primary pollutant of concern associated with agriculture in the area is
nitrate, with elevated nitrate levels having been identified in the Big Valley area. The gnat still occurs in Clear Lake, but at much lower numbers than in the 1940s–1970s. Its population is believed to be kept in check now by two introduced fish species (the
threadfin shad and the
inland silverside) that compete with the gnat for its preferred
zooplankton for food.
Invasive species .
By USGS. The ecology of Clear Lake has been significantly altered due to the presence of
invasive species. A notable invasive species is
hydrilla (
Hydrilla verticillata), a submerged aquatic plant which notably out-competes both native and non-native species to create pure stands. The plant established so successfully due to its ability to break into smaller
propagules, which can survive in sediment for up to seven years. The presence of hydrilla can affect fish stocks, and interfere with recreational boating or fishing. Hydrilla prevention is overseen by the
California Department of Food and Agriculture’s Hydrilla Eradication Program, whose goal is the eradication of existing hydrilla populations and prevention of future infestations. The program has been highly successful, managing to keep the lake hydrilla-free for two years before being detected once again in 2019. .
By Robert Pos. Furthermore, the lake has been subjected to a long history of non-native fish introductions. In the 1860s and 1870s,
goldfish (
Carassius auratus) and
lake whitefish (
Coregonus clupeaformis) were some of the first species to be introduced to Clear Lake.
Mississippi silverside (
Menidia audens) were the most abundant fish in the lake soon after their introduction in 1967. Moreover, both the
Florida strain largemouth bass (
Micropterus salmoides floridanus) and the Northern
largemouth bass (
M. salmoides salmoides) populations of the lake have persisted for decades after introduction.
Harmful algal blooms Due to its shallow depth and warm temperatures, Clear Lake is naturally
eutrophic. Written records documenting cloudy discolorations in the lake exist from the late 19th century. Referred to as
harmful algal blooms (HAB), these blooms consist of solid mats of scum and are associated with unpleasant odors. Studies have shown that increased nutrient contents, especially in the form of
phosphorus, from
fertilizer runoff can potentially influence cyanobacteria blooms Types of
toxin-producing cyanobacteria that have been identified in Clear Lake include the following genera:
Anabaena,
Microcystis,
Oscillatoria,
Planktothrix,
Aphanizomenon,
Cylindrospermopsis, and
Lyngbya, all of which can cause short- and long-term health effects. Studies are ongoing to determine the various environmental factors responsible for harmful algal blooms. The abandoned mine was declared a
Superfund site in the early 1990s and is still undergoing clean-up. The
California Department of Fish and Wildlife presently recommends that women of child-bearing age and children do not consume certain fish from Clear Lake, due to the presence of
methylmercury compounds in lake sediments.
Monitoring, mitigation, and restoration Clear Lake has been identified as an impaired water body under Section 303(d)(1)(A) of the
Clean Water Act. Nonpoint sources of pollution in Clear Lake include the
Bureau of Land Management, the
U.S. Forest Service, irrigated agriculture, and the County of Lake which prohibits the removal of wetland vegetation on private property. In 2009 the Middle Creek and Hamilton City Flood Damage Restoration and Ecosystem Act (AB74) was signed by Governor
Arnold Schwarzenegger. The project was to provide funding to breach the
levees and restore of lake and wetland. Bloody Island should again be an island. The project has the additional aim of reducing the amount of
phosphorus entering the lake by 40%. The additional water resulting from the increased lake area is to be allocated to municipal districts drawing water from the lake.
Yolo's water allowance under the Solano decree may also be increased. The passage of Assembly Bill 707 allowed for the creation of the Blue Ribbon Committee for the Rehabilitation of Clear Lake. The committee is made up of 15 county-appointed members from tribes, universities and various governmental organizations. The committee is charged with providing scientifically sound recommendations for the management of Clear Lake's "economy, ecosystem, and heritage". A Cyanobacteria Task Force was formed in 2014 which includes the
Big Valley,
Elem,
Scotts Valley and
Robinson tribes, as well as various state and federal governmental agencies. The task force focuses primarily on monitoring activities, particularly water sampling and testing for toxins. protect the lake from land-use practices in the domesticated areas of the surrounding watershed, and the lake's water quality impairments are addressed by federal and state regulatory programs. Multiple water suppliers in communities surrounding the lake provide potable water for municipal uses in accordance with California's public health regulations. Lake County participates in the state's Department of Water Resources'
Integrated Regional Water Management programs, within the Westside Region including Lake,
Colusa,
Napa,
Solano, and
Yolo counties. The Lake County Watershed Protection District is the lead agency for Lake County's participation in the Westside Region's long-term (2013–2033) water management programs. Within the jurisdictional boundary of the County of Lake, the Watershed Protection District provides the "Lake County Clean Water Program" for compliance with the
National Pollutant Discharge Elimination System (NPDES) pollution prevention programs, and with the NPDES stormwater management permit (issued by the State Water Resources Control Board as Water Quality Order 2013-0001-DWQ), by implementing the Lake County "Stormwater Management Plan". Lake County also complies with the NPDES aquatic pesticide permit program, allowing licensed pesticide applicators to eradicate nuisance aquatic weeds, in accordance with the "Clear Lake Integrated Aquatic Plant Management Plan". Multi-jurisdictional programs for natural resource management in the Clear Lake watershed—including federal, state, and local land owners in the County of Lake—are described in the "Clear Lake Integrated Watershed Management Plan". ==See also==