Colorectal cancer is a disease originating from the
epithelial cells lining the colon or rectum of the
gastrointestinal tract, most frequently as a result of genetic mutations in the
Wnt signaling pathway that increases signaling activity. The Wnt signaling pathway normally plays an important role for normal function of these cells including maintaining this lining. Mutations can be
inherited or
acquired, and most probably occur in the
intestinal crypt stem cell. The most commonly mutated gene in all colorectal cancer is the
APC gene, which produces the APC protein. Beyond the defects in the
Wnt signaling pathway, other mutations must occur for the cell to become cancerous. The
p53 protein, produced by the
TP53 gene, normally monitors
cell division and induces
programmed death if Wnt pathway defects are present. Eventually, a
cell line acquires a mutation in the
TP53 gene and transforms the tissue from a
benign epithelial tumor into an invasive
epithelial cell cancer. Sometimes the gene encoding p53 is not mutated, but another protective protein named
BAX is mutated instead. Approximately 70% of all
human genes are expressed in colorectal cancer, with just over 1% having increased expression in colorectal cancer compared to other forms of cancer.
PTEN, a tumor suppressor, normally inhibits PI3K, but can sometimes become mutated and deactivated. In addition to the oncogenic and inactivating mutations described for the genes above, non-hypermutated samples also contain mutated
CTNNB1,
FAM123B,
SOX9,
ATM, and
ARID1A. Progressing through a distinct set of genetic events, hypermutated tumors display mutated forms of
ACVR2A,
TGFBR2,
MSH3,
MSH6, SLC9A9,
TCF7L2, and
BRAF. The common theme among these genes, across both tumor types, is their involvement in Wnt and TGF-β signaling pathways, which results in increased
MYC activity, a central player in colorectal cancer. This is caused by a deficiency in MMR proteins – which are typically caused by
epigenetic silencing and/or inherited mutations (
e.g.,
Lynch syndrome). 15 to 18 percent of colorectal cancer tumours have MMR deficiencies, with 3 percent developing due to Lynch syndrome. The role of the mismatch repair system is to protect the integrity of the genetic material within cells (
i.e., error detecting and correcting). In this
adenoma-carcinoma sequence, normal epithelial cells progress to
dysplastic cells such as
adenomas, and then to carcinoma, by a process of progressive genetic mutation. Central to the polyp to CRC sequence are gene mutations, epigenetic alterations, and local inflammatory changes. Since then, the terms "field cancerization", "field carcinogenesis", "field defect", and "
field effect" have been used to describe pre-malignant or pre-neoplastic tissue in which new cancers are likely to arise. Field defects are important in the progression of colon cancer. However, as pointed out by Rubin, "The vast majority of studies in cancer research has been done on well-defined tumors
in vivo, or on discrete neoplastic foci
in vitro. Yet there is evidence that more than 80% of the somatic mutations found in mutator phenotype human colorectal tumors occur before the onset of terminal clonal expansion." Similarly, Vogelstein et al. An expanded view of field effect has been termed "etiologic field effect", which encompasses not only molecular and pathologic changes in pre-neoplastic cells but also the influence of exogenous environmental factors and molecular changes in the local
microenvironment on neoplastic evolution from tumor initiation to death.
Epigenetics As described by Vogelstein et al., an average cancer of the colon has only 1 or 2 oncogene mutations and 1 to 5 tumor suppressor mutations (together designated "driver mutations"), with about 60 further "passenger" mutations. The oncogenes and tumor suppressor genes are well-studied and described above under
Pathogenesis.
Epigenetic alterations are much more frequent in colon cancer than genetic (mutational) alterations. Epigenetic alterations, distinct from mutations, change how genes express proteins without changing the DNA sequence. One frequent type of epigenetic alteration in colorectal cancers is changed expression levels of particular
microRNAs. microRNAs (miRNAs) are small RNAs that bind the
3′ untranslated regions of their target
messenger RNAs and cause suppression of protein translation. Down-regulation and up-regulation of microRNAs are epigenetic alterations since their altered regulation of messenger RNAs does not directly involve changing the DNA sequence. MicroRNAs are important epigenetic factors in colorectal cancer, with 164 microRNAs significantly altered in colorectal cancers. miRNAs have an average of 300 target genes per miRNA. About 60% of human protein-coding genes appear to be under the epigenetic control of miRNAs. As an example,
miRNA-143 is downregulated in 88% of colorectal colon cancers and down-regulation of miRNA-143 causes up-regulation of protein expression of its target oncogene
KRAS as well as its target DNA methylating protein
DNMT3A As an example, 147 hypermethylations and 27 hypomethylations of protein-coding genes were frequently associated with colorectal cancers. Of the hypermethylated genes, 10 were hypermethylated in 100% of colon cancers, and many others were hypermethylated in more than 50% of colon cancers. In addition, 11 hypermethylations and 96 hypomethylations of miRNAs were also associated with colorectal cancers. The source and trigger of this age-related methylation is unknown. Approximately half of the genes that show age-related methylation changes are the same genes that have been identified to be involved in the development of colorectal cancer.
Genomics and epigenomics Consensus Molecular Subtypes (CMS) classification of colorectal cancer was first introduced in 2015. CMS classification is considered the most robust classification system available for CRC. It has a clear biological interpretability and basis for future clinical stratification and subtype-based targeted interventions. A novel Epigenome-based Classification (EpiC) of colorectal cancer was proposed in 2021, introducing 4 enhancer subtypes in people with CRC. Chromatin states using 6 histone marks are characterized to identify EpiC subtypes. A combinatorial therapeutic approach based on the previously introduced consensus molecular subtypes (CMSs) and EpiCs could significantly enhance current treatment strategies.
Microbiome and infectious agents Several studies show that tumors are consistently associated with reduced microbial diversity and the enrichment of specific taxa that promote inflammation and immune modulation.
Fusobacterium species are enriched in colorectal cancer tissue compared with adjacent normal mucosa, suggesting a selective tumor microenvironment for these bacteria. Recent experimental work has shown that membrane vesicles derived from selected
Clostridioides difficile strains can induce epithelial–mesenchymal transition in colonic epithelial cells, providing mechanistic insights into how this pathogen may contribute to colorectal carcinogenesis. Other pathogens have also been linked to colorectal carcinogenesis. Studies report enrichment of Clostridia and other pro-inflammatory taxa in tumor tissue, accompanied by production of metabolites with mutagenic potential and changes in host gene expression. Other studies similarly suggest that patients with a higher "dysbiosis index," characterized by expansion of pathogenic taxa such as Escherichia coli and Fusobacterium nucleatum and depletion of beneficial genera like
Bifidobacterium and
Lactobacillus, may carry an increased risk of developing colorectal cancer. Collectively, these findings support the view that disturbances in the gut microbiome can influence colorectal carcinogenesis through multiple mechanisms. ==Diagnosis==