Early diagnosis of EEE is difficult since symptoms overlap with other viral encephalitides. Detection of EEEV RNA in early infection can diagnose EEE, especially in the absence of
IgM antibodies since the presence of EEEV RNA indicates recent infection. The primary means of diagnosis, however, is by testing for anti-EEEV-specific IgM in serum or cerebrospinal fluid (CSF) via
enzyme-linked immunosorbent assay (ELISA). Some other methods, usually used during autopsy, include isolation of EEEV in
viral cultures, nucleic acid amplification assays, and immunohistochemical assays of infected CSF or brain tissue.
Plaque reduction neutralization tests (PRNT) to detect EEEV-specific
neutralizing antibodies can be performed for people who have elevated IgM titers to rule out false-positives. If samples are tested too soon, there may be false-negative results. Immunofluorescent assays may fail to diagnose EEE, in which case microparticle immunoassays can screen for EEEV IgM. Neuroimaging is helpful for identifying the severity of disease.
Fluid-attenuated inversion recovery (FLAIR) scans, a type of
magnetic resonance imaging (MRI), show significant involvement of the cortex, basal ganglia, thalami, and
brainstem. Viral infiltration of deep gray matter structures such as the basal ganglia and thalami is visible. This occurs with other arthropod-borne viral infections as well as
prion diseases,
rabies, and
autoimmune encephalitides. EEE can be distinguished from these diseases based on geography, how quickly symptoms develop, exposure to vectors, and family history. In rare cases, the
middle cerebellar peduncle may be affected. A distinctive feature of EEE often visible in
T2-weighted images is areas of increased signal in the basal ganglia and thalami. Electrical activity in the brain can be analyzed with
electroencephalogram (EEG) tests. EEG findings range from mild diffuse encephalopathy to non-convulsive status epilepticus, which is reflective of the degree of brain dysfunction. In more severe cases, EEG shows extremely depressed brain activity. A
lumbar puncture may be done to analyze CSF. EEEV infection has elevated opening pressure upon performing a lumbar puncture. Apart from antibody testing, analysis of CSF shows an increased prevalence of certain cells, particularly white blood cells (
pleocytosis), in CSF. Initially, there is
neutrophil-predominant pleocytosis, which shifts to
lymphocyte-predominance. CSF contains elevated protein levels and normal glucose levels. Analysis of blood shows that in severe cases, there is too little sodium in the blood. Examination of central nervous system tissue shows infiltration of neutrophils and
mononuclear cells, accumulation of inflammatory cells in perivascular space (perivascular cuffing), the presence of
inclusion bodies, and necrosis of neurons. Autopsy results show severe loss of neurons and
gliosis of the
dorsal motor nucleus. ==Management==