Egyptologist Barry Kemp has noted that DNA studies can only provide firm conclusions about the population of ancient Egypt if the sample results are of a significant number of individuals and represent a broad geographical and chronological range. According to historian William Stiebling and archaeologist Susan N. Helft, conflicting DNA analysis on recent genetic samples such as the
Amarna royal mummies has led to a lack of consensus on the genetic makeup of the ancient Egyptians and their geographic origins.
2012 study of Ramesses III In 2012, two mummies of two
20th dynasty individuals,
Ramesses III and "Unknown Man E" believed to be Ramesses III's son
Pentawer, were analysed by Albert Zink, Yehia Z Gad, and a team of researchers under
Zahi Hawass. Genetic kinship analyses revealed identical
haplotypes in both mummies; using the Whit Athey's haplogroup predictor, the Y chromosomal haplogroup
E1b1a was predicted. In another study by the same authors in 2020, which once again deals with the paternal lineage of Ramesses III and the "Unknown Man E" (possibly Pentawer),
E1b1a shows its highest frequencies in modern
West African populations (~80%) and
Central Africa (~60%).
2017 DNA study of Mummies at Abusir el-Meleq A study published in 2017 by Schuenemann et al. extracted DNA from 151 Egyptian mummies, whose remains were recovered from Abusir el-Meleq in Middle Egypt. The samples are from the time periods: Late
New Kingdom, Ptolemaic, and
Roman. Complete
mtDNA sequences from 90 samples as well as
genome-wide data from three ancient Egyptian individuals were successfully obtained and were compared with other ancient and modern datasets. The study used 135 modern Egyptian samples. The ancient Egyptian individuals in their own dataset possessed highly similar mtDNA haplogroup profiles, and cluster together, supporting genetic continuity across the 1,300-year transect. Modern Egyptians shared this mtDNA haplogroup profile, but also carried 8% more African component. A wide range of mtDNA haplogroups was found including clades of J, U, H, HV, M, R0, R2, K, T, L, I, N, X and W. In addition three ancient Egyptian individuals were analysed for
Y-DNA, two were assigned to
Middle Eastern haplogroup
J and one to haplogroup
E1b1b1a1b2. Both of these haplogroups are carried by modern Egyptians, and also common among
Afroasiatic speakers in Northern Africa, Eastern Africa and the Middle East. The researchers cautioned that the examined ancient Egyptian specimens may not be representative of those of all ancient Egyptians since they were from a single archaeological site from the northern part of Egypt. The analyses revealed that Ancient Egyptians had higher affinities with Near Eastern and European populations than modern Egyptians do, likely due to the 8% increase in the African component found in modern Egyptians. However, comparative data from a contemporary population under
Roman rule in Anatolia, did not reveal a closer relationship to the ancient Egyptians from the Roman period. "Genetic continuity between ancient and modern Egyptians cannot be ruled out despite this more recent sub-Saharan African influx, while continuity with modern Ethiopians is not supported". The absolute estimates of sub-Saharan African ancestry in these three ancient Egyptian individuals ranged from 6 to 15%, and the absolute estimates of sub-Saharan African ancestry in the 135 modern Egyptian samples ranged from 14 to 21%, which show an 8% increase in African component. The age of the ancient Egyptian samples suggests that this 8% increase in African component occurred predominantly within the last 2000 years. The 135 modern Egyptian samples were: 100 from modern Egyptians taken from a study by Pagani et al., and 35 from el-Hayez Western Desert Oasis taken from a study by Kujanova et al. The 35 samples from el-Hayez Western Desert Oasis, whose population is described by the Kujanova et al. study as a mixed, relatively isolated, demographically small but autochthonous population, were already known from that study to have a relatively high sub-Saharan African component, which is more than 11% higher than the African component in the 100 modern Egyptian samples. Verena Schuenemann and the authors of this study suggest a high level of genetic interaction with the
Near East since ancient times, probably going back to
Prehistoric Egypt although the oldest mummies at the site were from the New Kingdom: "Our data seem to indicate close admixture and affinity at a much earlier date, which is unsurprising given the long and complex connections between Egypt and the Middle East. These connections date back to Prehistory and occurred at a variety of scales, including overland and maritime commerce, diplomacy, immigration, invasion and deportation".
Responses to the 2017 DNA study The 2017 study has generated academic responses from scholars from other related disciplines, remarking on the conclusions of the study from a
multi-disciplinary approach. In 2020, Stuart Tyson Smith, professor of anthropology at UC Santa Barbara, stated: "Additionally, they are oblivious to the fact that the mouth of the
Faiyum Oasis, where the sample was located, is well known, through historical documents, as an area where Middle Eastern people, like the
Sherden, were settled as a reward for military service, during the late New Kingdom, about 1300 to 1070 BCE. This provides a far more likely explanation for any stronger affinity to Middle Eastern populations, and weaker ties to Sub-Saharan populations than modern Egyptians in their sample, but was not even considered." In 2021, Gourdine et al disputed Scheunemann et al's claim, in an unpublished article, that the increase in the sub-Saharan component in the modern Egyptian samples resulted from the trans-Saharan slave trade. Instead they argued that the sub-Saharan "genetic affinities" may be attributed to "early settlers" and "the relevant sub-Saharan genetic markers do not correspond with the geography of known trade routes". In 2022, biological anthropologist S.O.Y. Keita argued that there were problems with the study's approaches and conclusions such as over-generalizations and a failure to consider alternative explanations. Particularly, he raised issues with the comparative samples from West Africa as a proxy group and generalisations about geographical Egypt and population origins from the sample results. He also drew attention to the fact that the authors draw inference on migrations in line with their
Bayesian statistical approach rather than integrate other data into their explanations about the population history. In 2022, archaeologist Danielle Candelora stated that there were several limitations with the 2017 Scheunemann et al. study such as "new (untested) sampling methods, small sample size and problematic comparative data". In 2023, Stiebling and Helft acknowledged that the 2017 study had performed the largest study on ancient Egyptians but noted that the findings still derived from a small sample of mummies from one site in Middle Egypt dating to the New Kingdom and later periods. They also stated that this study could not represent earlier populations or Egyptians from Upper Egypt who were geographically closer to Sub-Saharan populations. Ehret also criticised the Schuenemann article for asserting that there was "no sub-Saharan genetic component" in the Egyptian population and cited previous genetic analysis which had identified the
Horn of Africa as the origin of the
E-M35 paternal haplogroup. In 2025,
UNESCO scholars Augustin Holl and Jean Gourdine both presented similar forms of criticisms, in the international
General History of Africa Volume IX publication, of the 2017 Scheunemann study in terms of its geographical coverage, general conclusions on the population of Egypt and methodological approach. Gourdine argued that there were a number of biases in the interpretation and the conclusions conflicted with other analysis such as the Amarna
STR analysis, and evidence of identifiable African haplogroups such as E1b1b1, JK2955 (haplogroup L3) and JK2963 (haplogroup
M1a1i), which preceded the trans-Saharan slave trade in Egypt.
2018 study of Nakht-Ankh and Khnum-Nakht The tomb of two high-status Egyptians, Nakht-Ankh and Khnum-Nakht, was discovered by Egyptian workmen directed by Sir William
Flinders Petrie and
Ernest Mackay in 1907. Nakht-Ankh and Khnum-Nakht lived during the
12th Dynasty (1985–1773 BCE) in Middle Egypt and were aged 20 years apart. Their tomb has been called
Tomb of Two Brothers because the mummies were buried adjacent to one other and inscriptions on the coffins mention the female name Khnum-Aa, who is described as 'lady of the house' and referred to as the mother of both Nakht-Ankh and Khnum-Nakht. The Y-chromosome sequences were not complete, but the Y-chromosome
SNPs indicated that they had different fathers, suggesting that they were half-brothers. The SNP identities were consistent with mtDNA haplogroup M1a1 with 88.05–91.27% degree of confidence, thus "confirming the African origins of the two individuals" according to the study authors, based on their maternal lineage.
2018 study of Djehutynakht In 2018 the mummified head of
Djehutynakht was analysed for mitochondrial DNA. Djehutynakht was the
nomarch of the
Hare nome in Upper Egypt during the 11th or 12th Dynasty in the early
Middle Kingdom period, c. 2000 BC. Two laboratories independently analysed Djehutynakht's DNA and found that he belonged to the mtDNA haplogroup U5b2b5, described by the lead author Odile Loreille as "a European haplogroup".
U5 is thought to have originated in Europe, and U5b2b5 has been found in ancient European samples dating from the Neolithic onwards. U5b2b5 has also been found in 10 samples from Christian Period
Nubia, and a related European sequence (U5b2c1) has been observed in an ancient sample from
Carthage (6th century BC). Haplogroup U5 is found in modern Egyptians, and is found in modern Egyptian
Berbers from the
Siwa Oasis in Egypt. A 2009 study by Coudray et al. recorded haplogroup U5 at 16.7% in the Siwa Oasis in Egypt, whereas haplogroup U6 is more common in other Berber populations to the west of Egypt.
2020 study on two Egyptian child mummies A study on male child mummies from the Greco-Roman period originating in the Memphite or Luxor area, revealed that the mtDNA for one was T2c1a and the other HV. Identical or phylogenetically close derivatives of these lineages are present in both ancient and modern Egyptians, as well as among several present-day populations of the Near East and North Africa. The researchers noted that mtDNA alone is not enough to reach any precise conclusion about the origin of an individual, but the results are in accordance with an Egyptian origin. The ages of the two mummified corpses ranged from 11–15 years old, and 2–4 years old.
2020 study of Tutankhamun and other mummies of the 18th Dynasty A 2020 study by Gad, Hawass, et al. analysed mitochondrial and Y-chromosomal haplogroups from
Tutankhamun's family members of the 18th Dynasty, using comprehensive control procedures to ensure quality results. The study found that the Y-chromosome haplogroup of the family was
R1b. Haplogroup R1b is carried by modern Egyptians. The Y-chromosome profiles for Tutankhamun and Amenhotep III were incomplete and the analysis produced differing probability figures despite having concordant
allele results. Because the relationships of these two mummies with the KV55 mummy (identified as
Akhenaten) had previously been confirmed in an earlier study, the haplogroup prediction of both mummies could be derived from the full profile of the KV55 data. The study states that "the H super-haplogroup is the most common mtDNA lineage in Europe and is found also in parts of present-day Africa and western Asia".
2020 study of mummies at the Kurchatov Institute In 2020, three mummies, dating from the 1st millennium BCE, from the Pushkin Museum of Arts collection were tested at the
Kurchatov Institute of Moscow for their mitochondrial and Y-chromosomal haplogroups. One of the mummies was found to belong to the Y-chromosomal haplogroup
R1b1a1b (R1b-M269), which originated in Eastern Europe, and another to the Y-chromosome haplogroup
E1b1b1a1b2a4b5a, They also belonged to mtDNA haplogroups L3h1 and N5, common in Africans and Middle Easterners, respectively. The third mummy was found to belong to mtDNA haplogroup N, which is widely distributed across Eurasia as well as eastern and northeastern Africa.& 2012 that Ramesses III and the Amarna ancient royal family (including Tutankhamun) showed "an affinity with sub-Saharan Africans in one affinity analysis, which does not mean that they lacked other affiliations — an important point that typological thinking obscures. Also, different data and algorithms might give different results, which would illustrate the complexity of biological heritage and its interpretation." Christopher Ehret, David Schoenbrun, Steven A Brandt and Shomarka Keita (2025) made further commentary on the Amarna results in a multidisciplinary review concerning Ehret's Afrasian theory that Afroasiatic languages originated in East Africa (as opposed to North Africa or the Near East), noting the R1b M89 haplogroup subtype identified among the three Amarna pharaohs (Tutankhamun, Amenhotep III and Akhenaten) was not further specified. The authors also stated that the R1b haplogroup usually interpreted as indicating a back migration to Africa from or via the Near East could have been attributed to
Asian back migration or
trans-Saharan connections as the genetic marker is found at relative high frequencies among
Chadic populations, although the authors cautioned that the specific R1b-V88 lineage found most commonly in Chadic speaking population was not determined to be present in the Egyptian 18th dynasty pharaohs. The authors further postulated that association of the palaeolithic Asian lineage (R1B) and an affiliation that is tropical African (E1b1a) is an example of admixture found in some Nile Valley populations, and that a mixture of lineages could illustrate Egypt being near a crossroads.
2025 Old Kingdom male from Nuwayrat Researchers successfully sequenced the first complete genome of an
Old Kingdom individual from Nuwayrat, a high-status male who lived c. 4,500-4,800 years ago (radiocarbon dated to 2855-2570 BCE, confirmed by funerary practices archaeologically attributed to the
Third and
Fourth Dynasty). The Nuwayrat individual's genetic profile is best modelled as an admixture between two sources, the majority of which (77.6% ± 3.8%) derives from a population represented by Middle Neolithic individuals from Skhirat-Rouazi in Morocco (4780–4230 BCE), whose own ancestry originates among populations of the Neolithic Levant (76.4 ± 4.0%), with a smaller Iberomaurusian component (22.4 ± 3.8%). The remaining (22.4% ± 3.8%) of the Nuwayrat individual's ancestry is most closely related to Neolithic Mesopotamian genomes (9000–8000 BCE). No other two-source model achieved statistical significance (P > 0.05). Two alternative three-source models were also identified, but these yielded similar ancestry proportions, with only a small additional contribution from the Neolithic/Chalcolithic Levant. Regarding the supplement facial reconstruction, the researchers noted that while the DNA analysis is indicative of population origin, there was no physical evidence of any particular skin colour, eye colour, or hair colour, and therefore, the reconstruction was produced in black and white without head hair or facial hair. The findings suggest a pattern of wide cultural and demographic expansion from the Mesopotamian region, which affected both Anatolia and Egypt during this period, and shows direct evidence of genetic ancestry related to the eastern
Fertile Crescent (specifically
Mesopotamian Neolithic) in early dynastic ancient Egypt.
Later genetic evolutions Genetic modelling suggests that most present-day Egyptians derive their ancestry from a combination of five ancient populations. Up to 75% traces back to groups related to the
Old Kingdom individual from Nuwayrat and to Middle Neolithic populations from Morocco, which contributed approximately 80% of the Nuwayrat individual's ancestry. Additional components include ancestry related to the
Bronze Age Levant, which the researchers noted was the second most common ancestry component, as well as more recent admixture from sub-Saharan Africa (East and West African ancestries) that the authors noted was suggested from previous published analysis and their models. ==Genetic studies on modern Egyptians==