Shortly after Cabot's resignation from the Senate, fellow Massachusetts Federalist
John Adams was elected to the presidency. Though he did not actively participate in the campaign, Cabot supported Adams over Hamilton's preferred choice,
Charles Cotesworth Pinckney, the current Minister to France.
Quasi-War As a private citizen, Cabot remained intensely interested in the progress of the French Revolution and intensely opposed to the Francophile policy of Thomas Jefferson, now serving as Vice President. He wrote that "the first and highest duty of the electors was to prevent the election of a French President." Hamilton and
Fisher Ames each urged the appointment of Cabot as part of a three-man mission to France, but Washington and Adams each declined. Adams instead chose
Elbridge Gerry, whose reputation in France, particularly with French Foreign Minister
Charles Maurice de Talleyrand-Périgord, was more positive. Cabot himself was opposed to the appointment of such a commission, believing that the time for negotiation with France had passed. After Pinckney's dismissal as Minister to France, Cabot called for war measures against France, including opposition to the establishment of any embassy whatsoever. He firmly believed that any continued diplomacy with France would only encourage
Jacobinism in the United States. In the winter of 1797–98, tensions with France escalated. Cabot, along with Pickering, Ames,
Oliver Wolcott, and
James McHenry, formed the faction of "war Federalists" led by Hamilton. They opposed the moderate (mostly southern) Federalists and Jefferson's Republicans, who sought peace with France at any cost. In March, President Adams declared to Congress that negotiations had failed and that the United States must arm for potential war. The revelation of the
XYZ affair effectively silenced all opposition and enabled Federalists to pass legislation creating a separate Department of the Navy. Adams appointed Cabot as the first
United States Secretary of the Navy, but Cabot refused the appointment.
Benjamin Stoddert filled the position in his place. Cabot became involved in the debate over the organization of a provisional army. Former President Washington suggested Hamilton, Pinckney, and former Secretary of War
Henry Knox, in that order, serve as major generals. Despite this, Adams granted Knox the first rank. Cabot sided with Washington, Hamilton, and other leading Federalists in objecting to Knox's elevation; President Adams gave in, but the entire affair created divisions within the Federalists. Some Federalists suggested the Jeffersonian Elbridge Gerry, now returned from his mission to France, had undue influence over Adams's decision-making. In 1799, Adams, without consulting his cabinet, appointed Minister to the Netherlands
William Vans Murray to lead a commission to renew peace negotiations with France, disappointing the war Federalists. Cabot remained strictly opposed to any negotiation with France without first advances toward reconciliation by the French. Despite his ardent opposition to Adams's policy toward France, Cabot sought to reconcile the factions within the Federalist Party, for fear of the party's destruction. Despite his efforts and frequent correspondence with leaders of both factions, the Federalist Party divided between the Adams and Pinckney-Hamilton campaigns through the remainder of 1799.
Alien and Sedition Acts Cabot's distance from the Adams administration also grew over the
Alien and Sedition Acts. Cabot defended
John Marshall, a Federalist opponent of the Acts, to the shock of Cabot's friend
Fisher Ames.
Campaign of 1800 As the 1800 campaign approached and Adams prepared to seek a second term, tensions within the Federalist Party were exacerbated by the publication of the 1792
Tench Coxe letter, in which Adams insinuated that the Pinckney family were British sympathizers, and the death of President Washington. At this point, Adams dismissed Pinckney as Secretary of State; Cabot understood this as "the complete abandonment by Mr. Adams of all the best principles of the Federalist Party." Cabot was also distressed by the use of "British sympathies" as a bludgeon against critics of Adams. When Adams returned to Quincy in the spring, Cabot made no effort to visit him. While Hamilton openly supported Pinckney for President over Adams, Cabot felt such a course was impossible and instead supported an equal electoral vote for Adams and Pinckney, to be resolved by the House of Representatives and urged Hamilton not to attack Adams openly. Hamilton disregarded these pleas, publishing his attack on Adams. Though they remained friends, Cabot strongly admonished Hamilton for damaging Federalists' chances in the election. ==Jeffersonian era (1801–1811)==