After passing his MSc, he started teaching in the department of biology at
Murari Chand College,
Sylhet, but lost his job during the
Partition of India, along with five of his colleagues. He then migrated to India and joined the
Central Inland Fisheries Research Institute (then known as the Manirampur Central Fisheries Station) near
Barrackpore on 1 June 1948 as a junior research assistant. As well as working at the organisation's headquarters, he also researched at the CIFRI regional center at
Cuttack,
Orissa. In Cuttack CIFRI center he served as junior research assistant from 1948–50, senior research assistant from 1950–55, fishery extension officer from 1959–60, was in charge of fish breeding from 1960–63 and became the officer-in-charge in 1964. He then worked in the Fish Culture Division of
Bhubaneswar from 1971–75 (present day
Central Institute of Freshwater Aquaculture).
Induced breeding methods While in the center of
Barrackpore, he noticed that oval-shaped transparent eggs came out as soon as he pressed the belly of fish floating in the tidal waters on the banks of the
Ganges. After a few hours in a container, he saw the transmission of life. This phenomenon attracted Chaudhuri to think about the
induced reproductive process in
Carp. After nine years of research on fish
endocrinology and
physiology as a senior research assistant at Cuttack Fisheries Laboratory, on 10 July 1956, == Honours ==