Chemical formula and molecular weight IP3 is an organic molecule with a
molecular mass of 420.10 g/mol. Its
empirical formula is C6H15O15P3. It is composed of an
inositol ring with three
phosphate groups bound at the 1, 4, and 5 carbon positions, and three
hydroxyl groups bound at positions 2, 3, and 6.
Chemical properties Phosphate groups can exist in three different forms depending on a solution's
pH. Phosphorus atoms can bind three oxygen atoms with single bonds and a fourth oxygen atom using a double/dative bond. The pH of the solution, and thus the form of the phosphate group determines its ability to bind to other molecules. The binding of phosphate groups to the inositol ring is accomplished by phosphor-ester binding (see
phosphoric acids and phosphates). This bond involves combining a
hydroxyl group from the inositol ring and a free phosphate group through a
dehydration reaction. Considering that the average physiological pH is approximately 7.4, the main form of the phosphate groups bound to the inositol ring
in vivo is PO42−. This gives IP3 a net negative charge, which is important in allowing it to dock to its receptor, through binding of the phosphate groups to positively charged residues on the receptor. IP3 has three
hydrogen bond donors in the form of its three hydroxyl groups. The hydroxyl group on the 6th carbon atom in the inositol ring is also involved in IP3 docking.
Binding to its receptor The docking of IP3 to its receptor, which is called the
inositol trisphosphate receptor (InsP3R), was first studied using deletion
mutagenesis in the early 1990s. Studies focused on the
N-terminus side of the IP3 receptor. In 1997 researchers localized the region of the IP3 receptor involved with binding of IP3 to between
amino acid residues 226 and 578 in 1997. Considering that IP3 is a negatively charged molecule, positively charged amino acids such as
arginine and
lysine were believed to be involved. Two arginine residues at position 265 and 511 and one lysine residue at position 508 were found to be key in IP3 docking. Using a modified form of IP3, it was discovered that all three phosphate groups interact with the receptor, but not equally. Phosphates at the 4th and 5th positions interact more extensively than the phosphate at the 1st position and the hydroxyl group at the 6th position of the inositol ring. ==Discovery==