Specially protected areas The first nature reserve in Kyrgyzstan, Issyk-Kul State Reserve was established in 1948 to protect unique nature landscapes and
waterfowl at Issyk-Kul. In 1975, it was acknowledged as a
Ramsar site. Biosphere Reserve Issyk-Kul covered by
UNESCO World Network of Biosphere Reserves was established in year 2000 within the administrative borders of
Issyk-Kul Region.
Fish The lake contains highly
endemic fish biodiversity, and some of the species, including four endemics, are seriously endangered. In recent years
yields of all fish species have declined markedly, due to a combination of
overfishing, heavy predation by two of the
introduced invasive species (the
pike perch and the
rainbow trout), and the cessation of lake
restocking with
juvenile fish from
hatcheries. At least four commercially targeted endemic fish species are sufficiently threatened to be included in the Red Book of the Kyrgyz Republic —
Schmidt's dace (
Leuciscus schmidti),
Issyk-Kul dace (
Leuciscus bergi),
Ili marinka (
Schizothorax pseudoaksaiensis issykkulensis), and sheer or naked osman (
Gymnodiptychus dybowskii). Five other indigenous species —
Issyk-kul minnow (
Phoxinus issykkulensis),
Issykul gudgeon (
Gobio gobio latus),
spotted thicklip loach (
Triplophysa strauchii ulachilicus),
grey stone loach (
Triplophysa dorsalis),
asp (
Leuciscus aspius iblioides) — are almost certainly threatened as
bycatch or are indirectly impacted by fishing activity and changes to the ecological structure and balance of the lake's fish population.
Sevan trout, a fish endemic to
Lake Sevan in
Armenia, was introduced into Issyk-Kul in the 1970s. While this fish is an
endangered species in its native waters, it has a much better chance to survive in Lake Issyk-Kul where it has actively predated on other species, but is limited in habitat for reproduction and in food.
Birds The lake supports large numbers of wintering
waterfowl as well as
waders and
passerines on
passage migration. Both the western and eastern ends of the lake have been recognised as
Important Bird Areas (IBAs) by
BirdLife International.
Dead Lake There is a small lake below the water level of Issyk Kul at the south-west side of the lake. This lake is called Tyz köl (salt lake) in Kyrgyz due to its very high saline content and swimming in the Issyk Kul salt lake is a very different experience from less salty water. The lake receives its water from small cold springs at the beach which lead the cold, less heavy water to the top of the lake and often the salty, heavy water below is oddly more warm than the water on the surface. ==Russian Navy test site==