American Civil War At the outbreak of the Civil War, Jones raised a volunteer company, the Rockingham Confederates, which became Company I,
33rd Virginia Infantry. Initially commissioned as
captain on June 22, 1861, he fought at the
First Battle of Manassas. On August 21, 1861, he was promoted to
lieutenant colonel of the 33rd. He fought in General
Thomas J. "Stonewall" Jackson's
Shenandoah Valley Campaign in the spring of 1862, under Col. John F. Neff (a Lutheran minister's son and fellow VMI graduate killed in action at the
Second Battle of Manassas). Jones was then appointed to command a
brigade in the Stonewall Division. He commanded the brigade throughout the
Seven Days fighting at the
Battle of White Oak Swamp and
Malvern Hill, where he was wounded, mustered out and recommissioned. Jones healed and rejoined the army during the
Maryland Campaign and took command of the Stonewall Division, which then captured the
U.S. outpost at
Harpers Ferry. At the
Battle of Antietam, his brigade was one of two on the front line and attacked early on September 17. They held the line for about an hour before partially retreating. However, a nearby shell burst stunned Jones and caused hearing loss, so he relinquished his command to Brig. Gen.
William E. Starke, who fell mortally wounded, leaving Col. A.J. Grigsby in command. Following the Maryland Campaign, Jones returned to the
Shenandoah Valley, and was tasked with rounding up deserters. Jones rejoined the
Army of Northern Virginia the day before the
Battle of Fredericksburg when he returned to command his old brigade. After Fredericksburg, charges of
cowardice were levelled against him by several subordinates, who claimed he had used a tree for protection. He was acquitted in April 1863 after a month-long trial, but again charged with cowardice for leaving the
Chancellorsville battlefield because of an ulcerated leg. He was never given a field command again and was seized by U.S. troops on July 4, 1863, near
Smithsburg, Maryland. He was imprisoned for the rest of the war with no desire by
Richmond authorities to affect an exchange. ==Postwar==