As a baron of Scotland, Sir John participated in governmental affairs of Scotland, including confirmation of the
Treaty of Salisbury, and was among those requesting
Edward I of England to certify the papal dispensation to permit the marriage of his son
Edward II to
Margaret of Norway, the heir presumptive to the Scottish throne after the death of her grandfather
Alexander III of Scotland. After the tragic death of
Margaret of Norway, the forced abdication of
John Balliol, and the English invasion of Scotland in 1296, John's relations with
Edward I of England soured and he came to support the Scottish cause against the English occupation during the
First Scottish War of Independence. A letter from 1297 indicates that
Edward I of England considered Sir John, along with his brother
Sir James the Steward of Scotland, and
Sir Robert the Bruce, Earl of Carrick, as the primary threats to his rule of Scotland. In the letter, he charges the English treasurer in Scotland,
Sir Hugh de Cressingham, to employ all the skill he has with the funds provided him to capture them to end the insurrection. On 22 July 1298, the feast day of Saint Mary Magdalene, the English army under Edward I discovered the Scottish host led by
Sir William Wallace and attacked. At the
Battle of Falkirk, Sir John Stewart, the brother of the Steward of Scotland, commanded the Scottish archers; Sir William Wallace, the Guardian of Scotland, commanded the infantry; and
Sir John Comyn, the nephew of King
John Balliol, commanded the cavalry. After the initial skirmish with the English cavalry, the Scottish cavalry under
Sir John Comyn fled the battlefield, leaving the archers fully exposed. The Scots resisted the attacks of the English cavalry for a time until the cavalry charged through the Scottish archers, killing their commander, Sir John Stewart. After falling from his horse, the archers rallied around the body of their fallen lord and were killed to the man. After the battle, Sir John Stewart was buried in the churchyard of the
Falkirk Old Parish Church. , inscribed:
In honour of the Men of Bute who, under the command of Sir John Stewart, fell to a man at the Battle of Falkirk, 22nd July 1298. :Who fought for Wallace on Falkirk's field, :John Stewart's men with sword and shield, :But o'er pow'rd thus! Their fate was sealed, :For freedom fell ==Marriage and issue==