and
N-acetylmuramic acid Although bacteria are traditionally divided into two main groups, Gram-positive and Gram-negative, based on their
Gram stain retention property, this classification system is ambiguous as it refers to three distinct aspects (staining result, envelope organization, taxonomic group), which do not necessarily coalesce for some bacterial species. The Gram-positive and Gram-negative staining response is also not a reliable characteristic as these two kinds of bacteria do not form phylogenetic coherent groups. All Gram-positive bacteria are bound by a single-unit lipid membrane, and, in general, they contain a thick layer (20–80 nm) of peptidoglycan responsible for retaining the Gram stain. A number of other bacteria—that are bound by a single membrane, but stain Gram-negative due to either lack of the peptidoglycan layer, as in the
mycoplasmas, or their inability to retain the Gram stain because of their cell wall composition—also show close relationship to the Gram-positive bacteria. For the bacterial cells bound by a single cell membrane, the term
monoderm bacteria has been proposed. Of these two structurally distinct groups of bacteria, monoderms are indicated to be ancestral. Based upon a number of observations including that the Gram-positive bacteria are the major producers of antibiotics and that, in general, Gram-negative bacteria are resistant to them, it has been proposed that the outer cell membrane in Gram-negative bacteria (diderms) has evolved as a protective mechanism against
antibiotic selection pressure.
Exceptions In general, Gram-positive bacteria are monoderms and have a single
lipid bilayer whereas Gram-negative bacteria are diderms and have two bilayers. Exceptions include: • Some taxa lack peptidoglycan (such as the class
Mollicutes, some members of the
Rickettsiales, and the insect-endosymbionts of the
Enterobacteriales) and are
gram-indeterminate. • The
Deinococcota have Gram-positive stains, although they are structurally similar to Gram-negative bacteria with two layers. • The
Chloroflexota have a single layer, yet (with some exceptions) stain negative. Two related phyla to the Chloroflexi, the
TM7 clade and the Ktedonobacteria, are also monoderms. Some Bacillota species are not Gram-positive. The class Negativicutes, which includes
Selenomonas, are diderm and stain Gram-negative. Additionally, a number of bacterial taxa (viz.
Negativicutes,
Fusobacteriota,
Synergistota, and
Elusimicrobiota) that are either part of the phylum Bacillota or branch in its proximity are found to possess a diderm cell structure. However, a conserved signature indel (CSI) in the
HSP60 (
GroEL) protein distinguishes all traditional phyla of Gram-negative bacteria (e.g.,
Pseudomonadota,
Aquificota,
Chlamydiota,
Bacteroidota,
Chlorobiota, "
Cyanobacteria",
Fibrobacterota,
Verrucomicrobiota,
Planctomycetota,
Spirochaetota,
Acidobacteriota) from these other atypical diderm bacteria, as well as other phyla of monoderm bacteria (e.g.,
Actinomycetota,
Bacillota,
Thermotogota,
Chloroflexota). The presence of this CSI in all sequenced species of conventional LPS (
lipopolysaccharide)-containing Gram-negative bacterial phyla provides evidence that these phyla of bacteria form a monophyletic clade and that no loss of the outer membrane from any species from this group has occurred. == Pathogenicity ==