Early coaching Stoops held assistant coaching positions at the
University of Iowa,
Kansas State University and the
University of Oklahoma. With his hiring by Arizona in November 2003, Stoops became the school's youngest coach at hiring at age 41, since
Larry Smith. Upon taking over, he hired his brother, University of Miami defensive backs coach
Mark Stoops, as defensive coordinator. Stoops then followed and hired
Texas Tech co-offensive coordinator
Sonny Dykes after the 2006 season. Dykes, named as winner of the All-American Football Foundation's Mike Campbell Top Assistant Award and later head coach at
Louisiana Tech,
California and
SMU, has been cited as one of the country's brightest offensive minds and top ten college recruiters by Rivals.com.
Arizona After going 6–6 in 2006, the Wildcats lost three of their first four games in 2007, including a 29–27 loss at home to
New Mexico. In that game, Stoops gained a 15-yard unsportsmanlike conduct penalty for his behavior on the sideline, which led to a New Mexico touchdown. Following a 2007, 21–20 home loss to
Stanford, dropping the team to 2–6, local media began speculating as to whether Stoops would be fired. However, subsequent statements by the athletic director and the university's president indicated that Stoops would return for an additional season. At the beginning of the season, many believed this to be the year Stoops and the Wildcats would reach their first college bowl game in a decade; a winning season was considered a must in order for Stoops to remain as Wildcats head coach. Under the direction of Stoops, Arizona scored 70 points in the season opener against the
Idaho Vandals, falling just four points short of a school record for points scored in a game. They went on to soundly defeat
Toledo,
UCLA,
Washington, and
California, but lost close games to
New Mexico and
Stanford. They went on to defeat
Washington State on the road to secure bowl eligibility at six wins, but lost to
Oregon on the road after mounting a dramatic second-half come-from-behind rally, and to
Oregon State in Tucson on a last-second field goal. The Wildcats' final game of the regular season was a 31–10 victory on December 6 in Tucson against
Arizona State in the annual
Territorial Cup rivalry game. With that win and a final regular season record of 7–5, Arizona accepted a bid from to the
Las Vegas Bowl to face
BYU. It was the Wildcats' first bowl appearance since the
1998 Holiday Bowl. Stoops' reputation in Tucson was mixed; while the Wildcats had a winning record and appeared in and won their first bowl game in ten years, many fans were divided during the season on whether he should be retained as head coach, as they expected Stoops to guide the team to an eight, nine or even ten-win season given the talent level and the offensive and defensive systems employed by the Wildcats (and with the overall talent level in the
Pac-10 conference perceived to be not as strong as usual in 2008). While Stoops brought the Wildcat football program to a level of respectability which was lost during the era of
John Mackovic, some fans were disappointed the program was not at the elite level of Stoops' former program
Oklahoma or of perennial Pac-10 football power
USC. However, Stoops was given strong votes of confidence by UA (later
UNLV) athletic director
Jim Livengood, by university president Dr. Robert Shelton, and by several prominent Arizona football boosters. On December 18, Stoops was rumored to be a candidate for the
Iowa State head coaching job, which eventually went to
Auburn assistant
Paul Rhoads. On December 20, Arizona defeated BYU in the Las Vegas Bowl. On December 23, Stoops was given a contract extension through the 2013 season by Livengood. "We're very pleased with the progress of Arizona football under Mike's direction," Livengood said. "His personal growth as a coach has been outstanding and we’re glad to continue moving forward with him as the steward for Arizona football." Stoops said on the news of his extension, "I'm very excited about the extension...The administration always has shown a commitment to what we’re doing, and this bolsters that support...We’re working hard to build stability and the commitment from Jim and the university at this time will go a long way to solidify that effort. I’m happy to be here in Tucson for a long time as head coach of our Wildcats. This is where my family wants to be." The Wildcats compiled an 8–4 (6–3) record in the 2009 regular season, which earned them a share of second place in the Pac-10 and a bid to the
Holiday Bowl. Stoops was named a semifinalist for the
George Munger Award, but was not named a finalist. The Wildcats compiled a 7–5 (4–5) record in the 2010 regular season, which earned them a seventh-place finish in the Pac-10 and a bid to the
Alamo Bowl. This bid was due, in part, to only four Pac-10 teams being bowl eligible after
USC was sanctioned from bowl eligibility, and
Arizona State was denied a bowl waiver from the
NCAA, which it needed because two of ASU's wins came against
FCS teams. Both USC and Arizona State finished higher than Arizona in the Pac-10 standings.
Oregon and
Stanford were selected for BCS bowls, and the
Rose Bowl selected an at large team,
TCU, to pair with the Big Ten champion,
Wisconsin, leaving the second highest Pac-10 affiliated bowl game, the Alamo Bowl, to choose between Arizona and Washington. The Wildcats started the 2011 season losing five of their six games, and their first four games in the newly expanded Pac-12 Conference. After a loss on the road to previously winless
Oregon State, Stoops was relieved of his duties on October 10, 2011, with the announcement made by athletic director
Greg Byrne. Co-defensive coordinator
Tim Kish was named as interim head coach. Stoops received a $1.4 million buyout from Arizona.
Return to Oklahoma On January 11, 2012, Stoops returned to OU as co-defensive coordinator. He was to be teamed with
Brent Venables, who shortly left to become the defensive coordinator at
Clemson. Kish was soon after named as Oklahoma's linebackers coach. When his brother retired at the end of the 2016 season, Stoops was retained by his successor,
Lincoln Riley. In October 2018, Stoops was fired from his position as defensive coordinator shortly after losing to Texas (48–45).
Alabama Nick Saban hired Stoops to be on his coaching staff as an analyst for the 2019 season.
Mark Stoops, his brother, offered him a position as an assistant coach at
Kentucky for the 2020 season. He declined the position and stayed at
Alabama as an analyst. Alabama would go on to win the National Championship that season.
Florida Atlantic On January 28, 2021, it was announced that
Willie Taggart had hired Stoops to be the defensive coordinator for
Florida Atlantic.
Kentucky On January 7, 2022,
Mark Stoops, his brother, hired him as linebackers coach at
Kentucky. Mark Stoops was fired on December 1, 2025, along with the rest of the staff, including Mike. ==Head coaching record==