Her work was funded initially by a Bathurst studentship in 1904 and then Newnham College fellowship for 6 years, starting in 1909. By 1906, she had enough data to formulate a rudimentary factorial analysis on snapdragon inheritance. In 1907, Wheldale published a full explanation what became termed
epistasis, the phenomenon of dominant-like relationship between different pairs of nonallelomorphic factors. Wheldale's study of genetics on flower coloration ultimately gained her the most recognition, with the 1907 publication of a full factorial analysis of flower colour inheritance in snapdragons and the four subsequent papers she published from 1909 to 1910. Her interest was in the biochemistry underlying the petal colours, rather than understanding inheritance itself. This application of chemical analysis to explain genetic data led to international recognition since it was among the first attempts at syntheses of these two areas. She left Cambridge University between 1911 and 1914 owing to a studentship at the
John Innes Horticultural Institution where, in addition to her laboratory work, she was valued as the Institution's leading botanical artist, able to capture the exact colours of plants. In 1913, she became one of the first three women to be elected to the
Biochemical Society, after the society's initial exclusion of women in 1911. She joined the biochemistry lab of
Frederick Gowland Hopkins at Cambridge University in 1914, where she pursued the biochemical aspects of petal colour, whose genetics she had elucidated during her work with Bateson. She worked on oxidase systems which were also involved in additional areas of plant biology. This led her to work for the Food Investigation Board from 1917 onward and then, and from 1922 leading a team working on fruit ripening at the Cambridge Low Temperature Station from 1922. ==Legacy==