This ecoregion is home to some eighty-nine species of mammals originally from both
Indomalayan and
Palearctic realms, including
civets,
martens,
Himalayan tahr and
muntjac. The
white-bellied musk deer, hunted for its
musk-glands, and the endangered
red panda are important inhabitants for whom the conifer forests are typical habitat with the red panda living between 3,000m and 4,000m where there is an undercover of bamboo beneath the fir trees. Other endangered species found here are the takin,
Himalayan serow (
Capricornis thar), and
particolored flying squirrel (
Hylopetes alboniger) while
Mandelli's mouse-eared bat, the
Asiatic wild dog, the
Asiatic black bear and the Himalayan tahr are considered vulnerable. There are two near-endemic squirrels,
Hodgson's giant flying squirrel (
Petaurista magnificus) and the
Bhutan giant flying squirrel (
Petaurista nobilis) along with a pure endemic rodent, the
Himalayan field mouse (
Apodemus gurkha). About 200 species of birds have been recorded in this ecoregion of which six are endemic;
chestnut-breasted partridge (
Arborophila mandellii),
hoary-throated barwing (
Actinodura nipalensis),
brown-throated fulvetta (
Alcippe ludlowi),
Nepal cupwing (
Pnoepyga immaculata),
buff-throated partridge (
Tetraophasis szechenyii), and
Lord Derby's parakeet (
Psittacula derbiana). The last two are limited to an area of conifer forest in Arunachal Pradesh. Threatened or endangered birds of the ecoregion include
Tibetan eared pheasant (
Crossoptilon harmani) and
Sclater's monal (
Lophophorus sclateri). A number of other birds are sensitive to habitat change and therefore potentially vulnerable, including the
blood pheasant (
Ithaginis cruentus),
Blyth's tragopan (
Tragopan blythii),
satyr tragopan (
Tragopan satyra),
Ward's trogon (
Harpactes wardi) and chestnut-breasted partridge. Indeed this ecoregion forms part of two
BirdLife International Endemic Bird Areas because of the number of birds for which the conifers are important for breeding. ==Threats and conservation==