Phylogenetic position }} }} Sea spiders had been interpreted as some kind of
arachnids or
crustaceans in historical studies. A competing hypothesis in the 2000s proposed that Pycnogonida belong to their own lineage,
sister to the lineage leading to other extant arthropods (i.e. euchelicerates,
myriapods, crustaceans and
hexapods, collectively known as Cormogonida). This Cormogonida hypothesis was first indicated by early phylogenomic analyses around that time, in
Cambrian stem-group arthropods like
radiodonts (frontal appendages), which was taken as evidence that Pycnogonida may be basal to all other living arthropods, since the protocerebral appendages were thought to be reduced and fused into a labrum in the last common ancestor of crown-group arthropods, and pycnogonids did not have a labrum coexisting with the chelifores. If that is true, it would have meant the sea spiders are the last surviving (and highly modified) members of an ancient, basal arthropod group that originated in the Cambrian oceans. However, the basis of this hypothesis was immediately refuted by subsequent studies using
Hox gene expression patterns, demonstrating the developmental homology between chelicerae and chelifores, with chelifore nerves innervated by a deuterocerebrum that has been rotated forwards, which was misinterpreted as a protocerebrum by the aforementioned study. Since the 2010s, the chelicerate affinity of Pycnogonida regained wide support as the sister group of Euchelicerata. Under the basis of phylogenomics, this is one of the only stable topologies of chelicerate interrelationships in contrast to the uncertain relationship of many euchelicerate taxa (e.g. poorly resolved position of arachnid orders other than
tetrapulmonates and
scorpions; non-monophyly of Arachnida in respect to Xiphosura). This is consistent with the chelifore-chelicera homology, as well as other morphological similarities and differences between pycnogonids and euchelicerates. Based on
molecular clock and fossil records, a 2025 study suggests pycnogonids and euchelicerates diverged during the Cambrian. However, due to the pycnogonids' highly modified anatomy and lack of intermediate fossils, their evolutional origin and relationship with the basal fossil chelicerates (such as
habeliids and
Mollisonia) is still difficult to compare and interpret.
Interrelationship }} }} The class Pycnogonida comprises over 1,300
species, which are split into over 80
genera. All extant genera are considered part of the single
order Pantopoda, which was subdivided into 11
families. Historically there were only 9 families, with species of nowadays Ascorhynchidae placed under Ammotheidae and Pallenopsidae under Callipallenidae. Both were eventually separated after they were considered distinct from the once-belonged families.) and the
paraphyly of
Callipallenidae with respect to
Nymphonidae. The topology also suggests Pantopoda is undergoing cephalic appendage reduction/reappearance and polymerous species acquisition
multiple times, contrary to previous hypothesis on pantopod evolution (cephalic appendages were thought to be progressively reduced along the branches, and the polymerous condition was thought to be ancestral). Based on the stem-group interpretation and
molecular clock analysis, a 2025 study suggest Pantopoda started to diversify around the early
Silurian to the late
Devonian, inferring a
ghost lineage of Paleozoic pantopods existed long before the oldest known pantopod around the
Jurassic period. (with subsequent updates on fossil taxa after Sabroux et al. (2023, • Suborder
Eupantopodida Fry, 1978 • Superfamily
Ammotheoidea Dohrn, 1881 • Family
Ammotheidae Dohrn, 1881 • Family
Pallenopsidae Fry, 1978 • Superfamily
Ascorhynchoidea Pocock, 1904 • Family
Ascorhynchidae Hoek, 1881 (=Eurycydidae Sars, 1891) • Superfamily
Colossendeoidea Hoek, 1881 (=Pycnogonoidea Pocock, 1904; Rhynchothoracoidea Fry, 1978) • Family
Colossendeidae Jarzynsky, 1870 • Family
Pycnogonidae Wilson, 1878 • Family
Rhynchothoracidae Thompson, 1909 • Superfamily
Nymphonoidea Pocock, 1904 • Family
Callipallenidae Hilton, 1942 • Family
Nymphonidae Wilson, 1878 • Superfamily
Phoxichilidioidea Sars, 1891 • Family
Endeidae Norman, 1908 • Family
Phoxichilidiidae Sars, 1891 • Suborder
Stiripasterida Fry, 1978 • Family
Austrodecidae Stock, 1954 • Suborder
incertae sedis • Family †
Palaeopycnogonididae Sabroux, Edgecombe, Pisani & Garwood, 2023 • Unknown Family • Genus
Alcynous Costa, 1861 (nomen dubium) • Genus
Foxichilus Costa, 1836 (nomen dubium) • Genus
Oiceobathys Hesse, 1867 (nomen dubium) • Genus
Oomerus Hesse, 1874 (nomen dubium) • Genus
Paritoca Philippi, 1842 (nomen dubium) • Genus
Pephredro Goodsir, 1842 (nomen dubium) • Genus
Phanodemus Costa, 1836 (nomen dubium) • Genus
Platychelus Costa, 1861 (nomen dubium) ==Fossil record==