The trifoliate orange was considered a member of the
genus Citrus until
Walter Swingle (1871 – 1952) moved it in 1943 to its own separate genus,
Poncirus, based on its deciduous trifoliate leaves differing from other
Citrus and as part of a larger reclassification that split the historical
Citrus into seven genera. More recently,
David Mabberley and Dianxiang Zhang reunited all of Swingle's novel genera back into
Citrus in 2008. Early phylogenetic analysis of trifoliate orange
plastids nested
Poncirus within the citrus, consistent with a single genus, but the sequencing of the nuclear genome by Wu,
et al. showed its genome to be most divergent, different enough to justify retention of
Poncirus as a separate genus. To explain the conflict between the plastid and nuclear genomic analysis, it was speculated that the trifoliate orange is likely either the progeny of an ancient hybridization between a core citrus and an unidentified more distant relative, or at some time in its history it acquired an
introgressed cpDNA genome from another species. Ollitrault, Curk and Krueger indicate that the majority of data are consistent with the enlarged
Citrus that includes the trifoliate orange, though they recognize that many botanists still follow Swingle. Were
Poncirus to be subsumed into
Citrus, where
C. polyandra is unavailable, the name
Citrus polytrifolia has been suggested. Zhang and Mabberley concluded this Yunnan cultivar is likely a hybrid between the trifoliate orange and another
Citrus, the opposite of what one would expect for a hybrid. This analysis dated its divergence from
P. trifoliata about 2.82 million years ago. but hybrids have been produced artificially between the trifoliate orange and other citrus. In the Swingle system, where the trifoliate orange is placed in
Poncirus, a hybrid genus name has been coined for these intra-generic crosses, "×
Citroncirus". The most notable of these are the
citrange, a cross between the trifoliate and
sweet oranges, and the
citrumelo, a hybrid of trifoliate orange and 'Duncan'
grapefruit. Placing the trifoliate orange in
Citrus would mean these hybrids would no longer be intergeneric, but instead hybrids within
Citrus. Genomic analysis of a number of these hybrids showed them all to derive from
P. trifoliata and not
P. polyandra. ==References==