Kuqi started his playing career with Kangasniemen Palloseura. He later played for Mikkelin Kissat,
Mikkelin Palloilijat,
HJK and
FC Jokerit in Finland's
Veikkausliiga. Kuqi played in the
UEFA Champions League in the autumn of 1998 with HJK. Kuqi was the league top scorer in the 2000 season, representing FC Jokerit. Having played for three clubs in Finland's Veikkausliiga, Kuqi became more well known, leading to his transfer to
Stockport County.
Stockport County Kuqi joined Stockport County in January 2001. Kuqi made his debut for the club in a 1–1 draw against
Tranmere Rovers on 3 February 2001. Regarded by many as the saviour of County's 2000–01 season as he impressed with his speed and strength, he went on to score six goals in eighteen games to help County retain their division one status. Kuqi is still the club's second most internationally capped player. However, under player-manager
Carlton Palmer, after he succeeded
Andy Kilner as manager, Kuqi was used less frequently. His good performances led him being linked with his future club
Blackburn. Kuqi was on the verge of joining Blackburn worth about a £1.2 million fee, but the move broke down and he accused Palmer of threatening him to be sacked for being injured Palmer was responsible for pressuring
Graeme Souness for Kuqi not joining the club. Kuqi still maintains his accusations towards Palmer, claiming his management is 'clueless' and feels the club made a mistake having Palmer as manager. Kuqi joined Blackburn Rovers four years later.
Sheffield Wednesday Kuqi joined
Sheffield Wednesday and signed a three-year deal for an undisclosed sum, rumoured to be €1.5 million Kuqi made his debut for the club in a 1–0 win over
Crewe on 12 January 2002. At
Sheffield Wednesday he scored 19 times between January 2002 and September 2003, unfortunately with Wednesday being relegated to
Division Two (or League One as it is now known) during his time at Hillsborough. Many Wednesday fans were bemused though at then manager Chris Turner's decision to let Kuqi leave for Ipswich for free after a strained relationship between the two. Whilst in Sheffield, Kuqi also scored a goal against
Sheffield United in
The Steel City Derby. He scored the second goal in the 81st minute at
Hillsborough to ensure a win after
Lloyd Owusu had opened the scoring with his very first touch of the ball on his debut.
Ipswich Town In September 2003, Kuqi joined
Ipswich Town on loan. After making 11 appearances and scoring 4 goals, Kuqi joined Ipswich Town permanently in November despite late interest from Town's rival
Norwich City. For the next two seasons at Ipswich Town, Kuqi became a regular in the first team and able to score goals. He scored 20 goals in the
Championship for Ipswich in the
2004–05 season, which made him the club's leading top scorer, along with
Darren Bent. By the end of the season with his contract at Ipswich Town coming to an end, Kuqi rejected the offer of a new contract with the club.
Blackburn Rovers His form with Ipswich earned him a move to the Premier League with
Blackburn. Kuqi made his debut in a 3–1 loss against
West Ham United on 13 September 2005 and scored his first goal of the Premier League and scored again in a 2–0 win over
West Brom on 1 October 2005. After the match, manager
Mark Hughes praised Kuqi for his two-goal performance. Kuqi then scored his second brace of the season in a 2–0 win over
Middlesbrough on 26 December 2005. During the season, Kuqi struggled to command a first team place and found himself on the bench. Kuqi scored seven Premier League goals for Blackburn in the
2005–06 season, but couldn't replicate his form from his time at Ipswich Town. During the following season Kuqi struggled to break into the first team and made only one appearance, coming on as a substitute in a 3–0 loss against Portsmouth. Six years later, Kuqi revealed he almost joined
Celtic, but the club instead opted to sign
Jan Vennegoor of Hesselink.
Crystal Palace He joined
Crystal Palace for a reported £2.5 million transfer fee at the end of the August transfer window in 2006. On his move, Kuqi admits he was surprised by Blackburn when he was sold to Crystal Palace and made his debut for the club in a 1–1 draw against
Luton Town. Kuqi did not have a prolific first season at
Selhurst Park, scoring only seven goals in 38 games, and at the end of August 2007, he signed for
Fulham on a four-month loan deal, where he made ten league appearances, scoring no goals. Kuqi was placed on the transfer list and fined two weeks wages by
Neil Warnock after signalling an
offensive gesture to Palace fans when they cheered as he was substituted following a particularly poor performance in the 2–0 defeat against
Wolverhampton Wanderers on 23 February 2008. Other reasons behind him being transfer listed were due to his weight gain and lack of fitness and Warnock told Kuqi there will be no way back for him In March 2008, Kuqi returned to Ipswich on loan until the end of the season to fill in for the injured
Jonathan Walters but failed to reproduce his form at Ipswich Town. He began the 2008–09 campaign with his first team prospects seemingly irretrievable but Crystal Palace manager Neil Warnock named (and used) him as a substitute for the away draw at Ipswich Town and home victory over
Charlton in September and on 4 October he scored the second goal of Palace's 2–0 victory at
Nottingham Forest. Kuqi's return to the first team completed a remarkable sequence of events, and he ended his season as the top scorer of his team. Kuqi was offered a new contract on 27 January 2009 which he rejected. By the end of the season, Kuqi was offered a new contract again along with 5 other players but a few months later, Warnock said he was expecting Kuqi to leave.
TuS Koblenz After Kuqi's contract ran out at Crystal Palace on 1 July 2009, he signed a two years deal with
TuS Koblenz which was his first non-England club since 2001, and the first German club in his career. He also spent half a season playing with his brother,
Njazi Kuqi.
Swansea City Kuqi signed for
Swansea City on a free transfer from
TuS Koblenz on 25 January 2010. He made his debut for the club in a 0–0 draw against
Coventry City and scored his first goal for Swansea in a 1–0 win at former club Crystal Palace on 9 February 2010. His first Derby goal, in his third appearance, also, came against
Crystal Palace in a 5–0 Derby victory at
Pride Park. After latching onto a sloppy stray backpass from former-Derby defender
Claude Davis to complete the rout with a goal Kuqi joked that the strike was "the worst of the five!" On 26 January 2011 Kuqi's contract with Swansea was terminated by mutual consent after he failed to break through into the first team. After being released by the club, Kuqi was linked with joining
Huddersfield Town Newcastle United On 10 February 2011, Kuqi joined Premier League side
Newcastle United for the remainder of the season. He was given the number 42 shirt and made his debut against former club
Blackburn Rovers on 12 February 2011 coming on in the 90th minute in a goalless draw. On his move, Kuqi admitted he was surprised to join the club but admitted that he was 'one of the happiest footballers in the world' He was released on 25 May 2011 after making six appearances, all as a substitute, without scoring.
Oldham Athletic In August 2011, following his release by Newcastle, Kuqi signed a one-year contract with
Oldham Athletic. The signing was considered as something of a coup for the Latics, as Kuqi was playing in the
Premier League, the previous season. He scored early in his first game for his new club in a home game against local rivals
Huddersfield Town in a 1–1 draw and celebrated with his trademark Flying Finn celebration in front of the away fans. Kuqi made it two goals in two games for Oldham with a headed goal against
Stevenage. Kuqi scored his third for Oldham against
Leyton Orient in a 3–1 victory; he scored the equalising goal and assisted the other two goals in a 3–1 victory. Kuqi was on target again against the MK Dons in October 2011 taking advantage of a mistake by the MK Dons goalkeeper to help Athletic to a 2–1 victory. Kuqi added another two goals to his tally after scoring twice against
Crewe Alexandra in the quarter-finals of the
Football League Trophy to help Oldham progress to the semi-final of the tournament with a 3–1 victory, with
Luca Scapuzzi also getting on the scoresheet. Kuqi left the club following the expiry of his contract on 1 July 2012 as the club could not afford to keep him for the 2012–13 campaign.
Hibernian In August 2012, Kuqi signed a one-year deal with
Scottish Premier League (SPL) team
Hibernian, with a further option. On his move, Kuqi said the passion of the fans (Hibernian) convinced him to join the club after he was in the stands to see an
Edinburgh derby. On 18 August 2012, Kuqi made his debut, coming on as a substitute in a 2–1 win against
St Mirren. Kuqi made only two starting appearances for Hibs during his season with the club and failed to score a goal in 14 total appearances. He was described by
BBC Sport as being one of the worst signings in the SPL that season. ==International career==