File:Slc6a4, ISH, mouse, dorsal raphe.jpg|thumbnail|Slc6a4 is expressed in median and dorsal raphe in the midbrain of the postnatal day 56 mouse.
Allen Brain Atlases in red and nuclear DNA in blue in a region of rat brain stem. Antibody staining and imaging by
EnCor Biotechnology Inc. The
gene that encodes the serotonin transporter is called
solute carrier family 6 (neurotransmitter transporter, serotonin), member 4 (SLC6A4, see
Solute carrier family). In
humans the gene is found on
chromosome 17 on location 17q11.1–q12. Mutations associated with the gene may result in changes in serotonin transporter function, and experiments with
mice have identified more than 50 different phenotypic changes as a result of genetic variation. These phenotypic changes may, e.g., be increased
anxiety and
gut dysfunction. Some of the human genetic variations associated with the gene are: The short variation has 14 repeats of a sequence while the long variation has 16 repeats. This polymorphism has been extensively investigated in over 300 scientific studies (as of 2006). The 5-HTTLPR polymorphism may be subdivided further: One study published in 2000 found 14
allelic variants (14-A, 14-B, 14-C, 14-D, 15, 16-A, 16-B, 16-C, 16-D, 16-E, 16-F, 19, 20 and 22) in a group of around 200
Japanese and
Caucasian people. In contrast, a 2008 meta-analysis found no significant overall association between the 5-HTTLPR polymorphism and autism. A hypothesized
gene–environment interaction between the short/short allele of the 5-HTTLPR and life stress as predictor for
major depression has suffered a similar fate: after an influential initial report in 2003 there were mixed results in replication in 2008, and a 2009 meta-analysis was negative. See
5-HTTLPR for more information.
rs25532 rs25532 is a SNP (C>T) close to the site of 5-HTTLPR. It has been examined in connection with
obsessive compulsive disorder (OCD).
I425V I425V is a rare mutation on the ninth exon. In 2003, researchers from Japan and the US reported that they had found this genetic variation in unrelated families with
OCD, and have found that it leads to faulty transporter function and regulation. A second variant in the same gene of some patients with this mutation suggests a genetic "double hit", resulting in greater biochemical effects and more severe symptoms.
VNTR in STin2 Another noncoding polymorphism is a
VNTR in the second
intron (
STin2). In a 2005 study, it was found with three
alleles: 9, 10 and 12 repeats. A
meta-analysis has found that the 12 repeat allele of the STin2 VNTR polymorphism had some minor (with
odds ratio 1.24), but statistically significant, association with
schizophrenia. A 2008 meta-analysis found no significant overall association between the STin2 VNTR polymorphism and
autism. The polymorphism has also been related to
personality traits with a 2008 Russian study finding individuals with the STin2.10 allele having lower
neuroticism scores as measured with the
Eysenck Personality Inventory. == Neuroimaging ==