In 1861, Principal Chief
John Ross signed an alliance with the Confederate States to avoid disunity in Indian Territory. Within less than a year, Ross and part of the National Council concluded that the agreement had proved disastrous. In the summer of 1862, Ross removed the tribal records to Union-held Kansas and then proceeded to Washington, D.C., to meet with President Lincoln. After Ross fled to Federal-controlled territory, Watie replaced him as principal chief. Following Lincoln's
Emancipation Proclamation in January 1863, Pegg called a special session of the Cherokee National Council. On February 18, 1863, it passed a resolution to emancipate all slaves within the boundaries of the Cherokee Nation. After many Cherokee fled north to Kansas or south to Texas for safety, pro-Confederates took advantage of the instability and elected Stand Watie principal chief. Ross' supporters refused to recognize the validity of the election. Open warfare broke out between Confederate and Union Cherokee within Indian Territory, the damage heightened by brigands with no allegiance at all. After the Civil War ended, both factions sent delegations to Washington. Watie pushed for recognition of a separate "Southern Cherokee Nation", but never achieved that. Although Watie fought Federal troops, he also led his men in fighting between factions of the Cherokee and in attacks on Cherokee civilians and farms, as well as against the
Creek, Seminole and others in Indian Territory who chose to support the Union. Watie is noted for his role in the
Battle of Pea Ridge,
Arkansas, on March 6–8, 1862. Under the overall command of General
Benjamin McCulloch, Watie's troops captured Union
artillery positions and covered the retreat of Confederate forces from the battlefield after the Union took control. However, most of the Cherokees who had joined Colonel John Drew's regiment defected to the Union side. Drew, a nephew of Chief Ross, remained loyal to the Confederacy. In August 1862, after John Ross and his followers announced their support for the Union and went to
Fort Leavenworth, the remaining Southern Confederate minority faction elected Stand Watie as principal chief. After Cherokee support for the Confederacy sharply declined, Watie continued to lead the remnant of his cavalry. He was appointed to the grade of Brigadier-General on May 10, 1864, with a date of rank of May 6, Watie commanded the First Indian Brigade of the
Army of the Trans-Mississippi, composed of two regiments of Mounted Rifles and three battalions of Cherokee, Seminole and
Osage infantry. They fought in a number of battles and skirmishes in the western Confederate states, including the Indian Territory, Arkansas,
Missouri,
Kansas, and Texas. Watie's force reportedly fought in more battles west of the
Mississippi River than any other unit. Watie took part in what is considered to be the greatest (and most famous) Confederate victory in Indian Territory, the
Second Battle of Cabin Creek, which took place in what is now
Mayes County, Oklahoma on September 19, 1864. He and General
Richard Montgomery Gano led a raid that captured a Federal wagon train and netted approximately $1 million worth of wagons, mules, commissary supplies, and other needed items. Stand Watie's forces massacred black haycutters at
Wagoner, Oklahoma during this raid. Union reports said that Watie's Indian cavalry "killed all the Negroes they could find", including wounded men. Since most Cherokee were now Union supporters, during the war, General Watie's family and other Confederate Cherokee took refuge in
Rusk and
Smith counties of east Texas. The Confederate Army put Watie in command of the Indian Division of Indian Territory in February 1865. By then, however, the Confederates were no longer able to fight in the territory effectively. In September 1865, after his demobilization, Watie went to Texas to see his wife Sallie and to mourn the death of their son, Comisky, who had died at age 15. After the war, Watie was a member of the Cherokee Delegation to the
Southern Treaty Commission, which renegotiated treaties with the United States. == Later life ==