In 1993,
Duke University Press published Rafael's first book,
Contracting Colonialism: Translation and Christian Conversion in Tagalog Society Under Early Spanish Rule, in which he examined the role of language and translation in the religious conversion of
Tagalogs to
Catholicism during the early period of Spanish rule of the Philippines. This was followed by a 1995 collection edited by Rafael and published by
Temple University Press entitled
Discrepant Histories: Translocal Essays on Filipino Cultures which studied a number of issues in the formation of the
Philippine nation-state and translocal Filipino cultures. His next book, published in 1999 by
Cornell University Press, was
Figures of Criminality in Indonesia, the Philippines, and Colonial Vietnam, a collection of essays on the relationships between criminality and colonial state formation. In 2000, Duke University Press published Rafael's
White Love and Other Events in Filipino History, a challenging of traditional, epic narratives of Filipino history and the emergence of revolutionary nationalism which focused on "episodic" instances of Filipino subject production throughout periods of colonization and independence.
The Promise of the Foreign: Nationalism and the Technics of Translation in the Spanish Philippines, also published by Duke University Press, appeared in 2005 and is the second volume of Contracting Colonialism. Its main argument is that translation was crucial to the emergence of Filipino nationalism, a mechanism from which was issued the promise of nationhood. This book was followed by "Motherless Tongues: The Insurgency of Language Amid Wars of Translation", also published by Duke UP in 2016, which delved into topics ranging from the colonial introduction of English in the Philippines to the fate of interpreters in Iraq during wartime. Rafael also wrote the introduction to a volume of the works by Nick Joaquin, "The Woman Who Had Two Navels and Tales of the Tropical Gothic" which came out in 2017 from Penguin Classics. In 2022, Rafael published his final book, "The Sovereign Trickster: Death and Laughter in the Age of Duterte", also under Duke UP, which drew upon biopolitical and necropolitical theories of the state to describe what he called a "prismatic history" of the social conditions and historical contexts that lead towards the vigilante regime of former Philippine president
Rodrigo Duterte. ==Personal life and death==