Political difficulties Whether, as alleged by some, Waynflete fled and hid himself during the period covered by the battle of Wakefield and Edward's first parliament in 1461 is very doubtful. A testimonial to his fidelity written by Henry to the Pope on 8 November 1460 was written while Henry was in Yorkist hands. Complaints of wrongful exaction of manorial rights laid before Edward IV himself in August 1461 by the tenants of the episcopal manor of
East Meon, Hampshire, were decided in the bishop's favour in parliament the following December. This also suggests that he was not regarded as an enemy by the Yorkists, even though he was a personal favourite of Henry's. A general charter of confirmation to him and his successors of the property and rights of the bishopric of Winchester on 1 July 1462 points in the same direction.
Eton College It is certain that Waynflete took an active part in the restoration of Eton College. Edward had annexed it to
St George's, Windsor in 1463, depriving it of a large part of its possessions. In the earliest Audit Rolls after the restoration of the college in 1467 there are many entries of visits of Provost Westbury to the lord of Winchester, which in January
1468–69 were for beginning the work of the church and providing money for them. Why a pardon was granted to Waynflete on 1 February 1469 does not appear. On the restoration of Henry VI on 5 October 1470 Waynflete welcomed him on his release from the
Tower of London. This necessitated a new pardon, granted a month after Edward's reinstatement on 30 May 1471, and a loan to the king of 2000 marks (£1333 6s 8d). In the years 1471–1472 to 1474 Waynflete was largely engaged in completing the church, now called the chapel, at Eton: his glazier supplied the windows, and he contracted on 15 August 1475 for the
rood-loft to be made on one side "like to the rode bite" in Bishop Wykeham's college at Winchester, and on the other like that of the college of
St Thomas of Acre in London. In 1479 he built the ante-chapel at the west end of the chapel, of
Headington stone.
Magdalen College In 1474 Waynflete, being the principal
executor of Sir
John Fastolf, who died in 1459 leaving a much-contested will, procured the conversion of his bequest for a
collegiate church of seven priests and seven almsmen at Caistor, Norfolk, into one for seven fellows and seven poor scholars at Magdalen. In the same year the college took possession of the alien priory of Sele, in what is now
Upper Beeding, Sussex, the proceedings for the suppression of which had been going on since 1469. The new, now the old, buildings at Magdalen were begun the same year, the foundation-stone being laid in the middle of the high altar on 5 May 1474. Licences from 1477 to authorized additions to the endowment. On 23 August 1480, the college being completed, the great west window being contracted to be made after the fashion of that at All Souls' College, a new president,
Richard Mayew, fellow of New College, was installed on 23 August 1480, and statutes were promulgated. The statutes were for the most part a replica of those of New College, members of which were, equally with members of Magdalen, declared to be eligible for the presidency. They provided for a head and 70 scholars, but the latter were divided into 40 fellows and 30 scholars called
demies, because their commons were half those of the fellows. Magdalen College School was established at the gates of the college to be, like Eton, a grammar school free of tuition fees for all comers, under a master and usher, the first master being
John Ankywyll, with a salary of £10 a year, the same as at Winchester and Eton. The renewal of interest in
classical literature was shown in the prohibition of the study of
sophistry by any scholar under the age of eighteen, unless he had been pronounced proficient in grammaticals. On 22 September 1481 Waynflete received Edward IV in state at the college, where he passed the night, and in July 1483 he received
Richard III there in even greater state. In 1484 Waynflete founded another Magdalen College School in his birth town of
Wainfleet All Saints, Lincolnshire as a satellite feeder school for Magdalen College, Oxford. The building is now used as a library, with a museum upstairs. On 27 April 1486, Waynflete, like Wykeham, made his will at their favourite manor, now
Bishop's Waltham Palace. He gave the same pecuniary bequests to Winchester and New Colleges as to his own college of Magdalen, but the latter he made residuary
devisee of all his lands. Waynflete died on 11 August 1486 at
Bishop's Waltham in Hampshire. He was buried in the Magdalen Chapel at
Winchester Cathedral. ==Commemoration==