|alt=A stream runs between leafless trees, beneath a footbridge, and towards a reed-heavy area. Historically, the Fonteyn Kill's water has been noted for its cleanness. In 1924, the stream's "purity" was noted while an 1867 book describes the kill's waters as "
pellucid". More recently, the stream has been cited as suffering from
urban stream syndrome. In spite of this, the stream itself is bordered by a combination of residential lots and forested swaths ranging from in width. A 2010 study of the stream found that the Fonteyn Kill's
specific conductance, a measure of the amount of dissolved
road salt in the stream's water, was nearly 1.0
mS/cm, higher than any value recorded in the Casperkill. The total inorganic nitrogen in the kill, which is usually correlated with surrounding green cover, was about , average for measurements taken in the Fonteyn Kill and Casperkill in that study. The study also found that the Fonteyn Kill's score on the Hilsenhoff family biotic index (HBI), a scale measuring pollution based on the tolerance of endemic
benthic macroinvertebrates, was approximately six, indicating fairly poor water quality, with scores for the rest of the Casperkill–Fonteyn Kill watershed were as high as seven (poor water quality) to as low as four (very good water quality).{{efn|HBI scores are calculated as HBI=\frac{\sum n_{i}\times a_{i}}{N}, where
ni is the number of taxa
i collected,
ai is the tolerance value for taxon
i, and
N is the total number of sampled specimens. Scores ranging from 5.76–6.50 indicate "fairly poor" water quality and that "substantial pollution [is] likely" in the sampled body of water.}} An oil spill was observed in the kill in 2016 and DEC staff were again sent to respond. The DEC installed
booms to absorb the oil and began an investigation into the spill's source, which was unknown as of December 6. Efforts are being made to monitor the water quality of the Fonteyn Kill, led by Vassar College's Environmental Research Institute and the
Cornell University Cooperative Extension Dutchess County Environment Program. Three sites are regularly sampled for water quality while devices such as
sondes continuously record temperature, conductivity, and
pH. Benthic macroinvertebrates are frequently counted and
fecal coliform counts are also run. ==Geography and geology==