Study of the genetics of human memory is in its infancy though many genes have been investigated for their association to memory in humans and non-human animals. A notable initial success was the association of
APOE with memory dysfunction in
Alzheimer's disease. The search for genes associated with normally varying memory continues. One of the first candidates for normal variation in memory is the protein
KIBRA, which appears to be associated with the rate at which material is forgotten over a delay period. There has been some evidence that memories are stored in the nucleus of neurons.
Genetic underpinnings Several
genes, proteins and enzymes have been extensively researched for their association with memory. Long-term memory, unlike short-term memory, is dependent upon the
synthesis of new proteins. This occurs within the
cell, and concerns the particular transmitters, receptors, and new synapse pathways that reinforce the communicative strength between neurons. The production of new proteins devoted to synapse reinforcement is triggered after the release of certain signaling substances (such as calcium within hippocampal neurons) in the cell. In the case of hippocampal cells, this release is dependent upon the expulsion of magnesium (a binding molecule) that is expelled after significant and repetitive synaptic signaling. The temporary expulsion of magnesium frees
NMDA receptors to release calcium in the cell, a signal that leads to gene transcription and the construction of reinforcing proteins. For more information, see
long-term potentiation (LTP). One of the newly synthesized proteins in LTP is also critical for maintaining long-term memory. This protein is an autonomously active form of the enzyme
protein kinase C (PKC), known as
PKMζ. PKMζ maintains the activity-dependent enhancement of synaptic strength and inhibiting PKMζ erases established long-term memories, without affecting short-term memory or, once the inhibitor is eliminated, the ability to encode and store new long-term memories is restored. Also,
BDNF is important for the persistence of long-term memories. The long-term stabilization of synaptic changes is also determined by a parallel increase of pre- and postsynaptic structures such as
axonal bouton,
dendritic spine and
postsynaptic density. On the molecular level, an increase of the postsynaptic scaffolding proteins
PSD-95 and
HOMER1c has been shown to correlate with the stabilization of synaptic enlargement.
DNA methylation and demethylation Rats exposed to an intense
learning event may retain a life-long memory of the event, even after a single training session. The long-term memory of such an event appears to be initially stored in the
hippocampus, but this storage is transient. Much of the long-term storage of the memory seems to take place in the
anterior cingulate cortex. When such an exposure was experimentally applied, more than 5,000 differently methylated DNA regions appeared in the hippocampus neuronal
genome of the rats at one and at 24 hours after training. These alterations in methylation pattern occurred at many genes that were
downregulated, often due to the formation of new
5-methylcytosine sites in CpG rich regions of the genome. Furthermore, many other genes were upregulated, likely often due to hypomethylation. Hypomethylation often results from the removal of methyl groups from previously existing 5-methylcytosines in DNA. Demethylation is carried out by several proteins acting in concert, including the
TET enzymes as well as enzymes of the DNA
base excision repair pathway (see
Epigenetics in learning and memory). The pattern of induced and repressed genes in brain neurons subsequent to an intense learning event likely provides the molecular basis for a long-term memory of the event.
Epigenetics Studies of the molecular basis for memory formation indicate that
epigenetic mechanisms operating in neurons in the
brain play a central role in determining this capability. Key epigenetic mechanisms involved in memory include the
methylation and
demethylation of neuronal DNA, as well as modifications of
histone proteins including
methylations,
acetylations and deacetylations. Stimulation of brain activity in memory formation is often accompanied by the generation of
damage in neuronal DNA that is followed by repair associated with persistent epigenetic alterations. In particular the DNA repair processes of
non-homologous end joining and
base excision repair are employed in memory formation.
DNA topoisomerase 2-beta in learning and memory During a new learning experience, a set of genes is rapidly expressed in the brain. This induced
gene expression is considered to be essential for processing the information being learned. Such genes are referred to as
immediate early genes (IEGs).
DNA topoisomerase 2-beta (TOP2B) activity is essential for the expression of IEGs in a type of learning experience in mice termed associative fear memory. Such a learning experience appears to rapidly trigger TOP2B to induce double-strand breaks in the
promoter DNA of IEG genes that function in
neuroplasticity.
Repair of these induced breaks is associated with DNA demethylation of IEG gene promoters allowing immediate expression of these IEG genes. The induction of particular double-strand breaks are specific with respect to their inducing signal. When neurons are activated
in vitro, just 22 of TOP2B-induced double-strand breaks occur in their genomes. Such TOP2B-induced double-strand breaks are accompanied by at least four enzymes of the
non-homologous end joining (NHEJ) DNA repair pathway (DNA-PKcs, KU70, KU80, and DNA LIGASE IV) (see Figure). These enzymes repair the double-strand breaks within about 15 minutes to two hours. The double-strand breaks in the promoter are thus associated with TOP2B and at least these four repair enzymes. These proteins are present simultaneously on a single promoter
nucleosome (there are about 147 nucleotides in the DNA sequence wrapped around a single nucleosome) located near the transcription start site of their target gene. Contextual
fear conditioning in the mouse causes the mouse to have a long-term memory and fear of the location in which it occurred. Contextual fear conditioning causes hundreds of DSBs in mouse brain medial prefrontal cortex (mPFC) and hippocampus neurons (see Figure: Brain regions involved in memory formation). These DSBs predominately activate genes involved in synaptic processes, that are important for learning and memory. ==In infancy==