University of Virginia After graduation, he spent eight seasons as an assistant coach under
Terry Holland at Virginia until being tabbed the 8th head coach in
Virginia Cavaliers history in 1990. He would go on to lead that program for eight seasons. He led Virginia to six postseason appearances (five
NCAA, one
NIT), a share of the 1995 ACC regular-season title and four 20-win campaigns. He beat Roy Williams and #1 seeded Kansas in Kansas City to reach the Elite 8 in 1995. Jones' tenure in Charlottesville crested at that point; he only had one winning season in his final three years. He resigned at the end of the 1997–98 season, having spent the first 20 years of his adult life at UVa as either a player, assistant coach, or head coach.
American University Following a brief stint as associate head coach at
Rhode Island, Jones was hired as the head coach at
American University in 2000. After the school moved from the
Colonial Athletic Association, he guided
American to the 2002, 2004, 2008 and 2009
Patriot League regular season championships, and in 2002 he was honored as the Basketball America Patriot League
Coach of the Year. However, the team fell in the
conference tournament title game each year from 2002 to 2004, failing to garner an NCAA tournament bid. On December 22, 2007, Jones led AU to its first victory over the
University of Maryland in the last 80 years. Jones previously coached AU to victory over
Florida State University, making him the only Patriot League coach to beat an ACC team. On March 14, 2008, Jones led AU to its first
NCAA tournament, as the Eagles beat
Colgate 52–46. On March 22, 2008, Jones and the American University faced the
Tennessee Volunteers at
BJCC Arena in Birmingham, AL. Despite leading early on, American lost to Tennessee 72–57, ending American's NCAA trip. The next year, Jones led the Eagles into the
2009 NCAA Division I men's basketball tournament on March 19, 2009. After holding a 14-point lead over
Villanova early in the second half, the 14th-seeded Eagles let the game slip away at the end, falling to Villanova at the
Wachovia Center. Despite being a #2 seed in the
2011 Patriot League tournament, American was upset in the semifinal round, getting knocked off by
Lafayette College in double overtime, 73–71.
Old Dominion University On April 3, 2013, Jones was hired as the new head coach at
Old Dominion University. As of the 2022–23 season, he had a 200–125 season record at ODU and had taken them to one
NCAA tournament. On December 20, 2023, Jones suffered a
heart attack prior to coaching the Monarchs in the
2023 Diamond Head Classic. Despite making a full recovery, Jones resigned for the remainder of the season while special assistant coach
Kieran Donohue fulfilled his role as the interim head coach. On February 26, 2024, he announced his retirement from coaching. ==Head coaching record==