Lees started her independent academic career at the
Geisel School of Medicine (then
Dartmouth Medical College), where she continued to study lipid isolation and to develop quantitative extraction strategies. She eventually returned to Harvard Medical School, where she established a laboratory at the
Eunice Kennedy Shriver National Institute of Child Health and Human Development. She was made Director of the department.
Proteolipids, such as the Folch-Lees proteolipid identified by Lees, are critical constituents of cell membranes. They are generally involved with ion channel activity and cellular processes. Lees analyzed the conditions for the
electrophoretic analysis of the Folch-Lees proteolipid and developed a strategy to isolate the Folch-Lees proteolipid. She used antibodies raised against Folch-Lees proteolipid to study the membrane topology of Folch-Lees proteolipids. Alongside her work on proteolipids, Lees studied
myelin, the fatty substance that surrounds the axons of nerves. She argued that dynamic interactions within myelin were responsible for its function. She studied myelin proteins, and identified Na⁺/K⁺-ATPase as a myelin protein. == Academic service ==