Abundant information exists concerning
R-genes (for disease resistance) in wheat, and a continuously updated on-line catalogue, the Catalogue of Gene Symbols, of these genes can be found at . Another online database of
cereal rust resistance genes is available at [https://web.archive.org/web/20061006193218/http://www.cdl.umn.edu/res_gene/res_gene.html. Unfortunately, less is known about rye and particularly triticale R-genes. Many R-genes have been transferred to wheat from its wild relatives, and appear in such papers and catalogues, thus making them available for triticale breeding. The two mentioned databases are significant contributors to improving the genetic variability of the triticale
gene pool through gene (or more specifically, allele) provision. Genetic variability is essential for progress in breeding. In addition, genetic variability can also be achieved by producing new primary triticales, which essentially means the reconstitution of triticale, and the development of various hybrids involving triticale, such as triticale-rye hybrids. In this way, some
chromosomes from the R genome have been replaced by some from the D genome. The resulting so-called substitution and translocation triticale facilitates the transfer of R-genes.
Introgression Introgression involves the crossing of closely related plant relatives, and results in the
transfer of 'blocks' of genes, i.e. larger segments of chromosomes compared to single genes.
R-genes are generally introduced within such blocks, which are usually incorporated/translocated/introgressed into the distal (extreme) regions of
chromosomes of the crop being introgressed. Genes located in the proximal areas of chromosomes may be completely linked (very closely spaced), thus preventing or severely hampering
recombination, which is necessary to incorporate such blocks. Molecular markers (small lengths of
DNA of a characterized/known sequence) are used to 'tag' and thus track such translocations. A weak
colchicine solution has been employed to increase the probability of recombination in the proximal chromosome regions, and thus the introduction of the translocation to that region. The resultant translocation of smaller blocks that indeed carry the R-gene(s) of interest has decreased the probability of introducing unwanted genes. The ''''
resistance gene was introgressed into wheat from the
2R chromosome of
rye. A 2014 study found that ''''
dwarfing gene from the
rye 5R chromosome also provides
Fusarium head blight (FHB) resistance in this host.
Production of doubled haploids Doubled haploid (DH) plants have the potential to save much time in the development of
inbred lines. This is achieved in a single generation, as opposed to many, which would otherwise occupy much physical space/facilities. DHs also express deleterious recessive
alleles otherwise masked by dominance effects in a genome containing more than one copy of each chromosome (and thus more than one copy of each gene). Various techniques exist to create DHs. The
in vitro culture of
anthers and
microspores is most often used in
cereals, including triticale. These two techniques are referred to as androgenesis, which refers to the development of
pollen. Many plant species and
cultivars within species, including triticale, are recalcitrant in that the success rate of achieving whole newly generated (diploid) plants is very low. Genotype by culture medium interaction is responsible for varying success rates, as is a high degree of microspore abortion during culturing. The response of parental triticale lines to
anther culture is known to be correlated to the response of their progeny. Chromosome elimination is another method of producing DHs, and involves
hybridisation of wheat with
maize (
Zea mays L.), followed by
auxin treatment and the artificial rescue of the resultant haploid embryos before they naturally abort. This technique is applied rather extensively to wheat. Its success is in large part due to the insensitivity of maize pollen to the crossability inhibitor genes known as Kr1 and Kr2 that are expressed in the floral style of many wheat cultivars. The technique is unfortunately less successful in triticale. However,
Imperata cylindrica (a grass) was found to be just as effective as
maize with respect to the production of DHs in both
wheat and triticale.
Application of molecular markers An important advantage of
biotechnology applied to plant breeding is the speeding up of cultivar release that would otherwise take 8–12 years. It is the process of
selection that is actually enhanced, i.e., retaining that which is desirable or promising and ridding that which is not. This carries with it the aim of changing the genetic structure of the plant population. The website is a valuable resource for
marker assisted selection (MAS) protocols relating to R-genes in wheat. MAS is a form of indirect
selection. The Catalogue of Gene Symbols mentioned earlier is an additional source of
molecular and morphological markers. Again, triticale has not been well characterised with respect to molecular markers, although an abundance of rye molecular markers makes it possible to track rye chromosomes and segments thereof within a triticale background. Yield improvements of up to 20% have been achieved in hybrid triticale cultivars due to
heterosis. This raises the question of what inbred lines should be crossed (to produce hybrids) with each other as parents to maximize yield in their hybrid progeny. This is termed the 'combining ability' of the parental lines. The identification of good combining ability at an early stage in the breeding programme can reduce the costs associated with 'carrying' a large number of plants (literally thousands) through it, and thus forms part of efficient selection. Combining ability is assessed by taking into consideration all available information on
descent (
genetic relatedness),
morphology, qualitative (simply inherited) traits and
biochemical and molecular markers. Exceptionally little information exists on the use of molecular markers to predict heterosis in triticale. Molecular markers are generally accepted as better predictors than morphological markers (of
agronomic traits) due to their insensitivity to variation in environmental conditions. A useful molecular marker known as a
simple sequence repeat (SSR) is used in breeding with respect to selection. SSRs are segments of a genome composed of
tandem repeats of a short sequence of
nucleotides, usually two to six
base pairs. They are popular tools in genetics and breeding because of their relative abundance compared to other marker types, a high degree of polymorphism (number of variants), and easy assaying by polymerase chain reaction. However, they are expensive to identify and develop. Comparative genome mapping has revealed a high degree of similarity in terms of sequence colinearity between closely related crop species. This allows the exchange of such markers within a group of related species, such as wheat, rye and triticale. One study established a 58% and 39% transferability rate to triticale from wheat and rye, respectively. Transferability refers to the phenomenon where the sequence of DNA nucleotides flanking the SSR locus (position on the
chromosome) is sufficiently homologous (similar) between genomes of closely related species. Thus, DNA primers (generally, a short sequence of nucleotides used to direct the copying reaction during PCR) designed for one species can be used to detect SSRs in related species. SSR markers are available in wheat and rye, but very few, if any, are available for triticale. Little has been documented on
Agrobacterium-mediated transformation of wheat: while no data existed with respect to triticale until 2005, the success rate in later work was nevertheless low. ==Research==